Detailed information of SNP:
|
SNP ID:
sf0419095643(Gbrowse)
Chromosome: chr04 Position: 19095643 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 89.81% | 10.19% |
| All Indica | 757 | 81.51% | 18.49% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 351 | 69.23% | 30.77% |
| Indica II | 204 | 94.61% | 5.39% |
| Indica Intermediate | 202 | 89.60% | 10.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419095643 | T->A | LOC_Os04g32100(LOC_Os04g32100.1) | INTRON |