Detailed information of SNP:
|
SNP ID:
sf0419110912(Gbrowse)
Chromosome: chr04 Position: 19110912 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.93% | 44.07% |
| All Indica | 797 | 89.59% | 10.41% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 373 | 86.86% | 13.14% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419110912 | A->G | INTERGENIC | None |