Detailed information of SNP:
|
SNP ID:
sf0419159230(Gbrowse)
Chromosome: chr04 Position: 19159230 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.71% | 49.29% |
| All Indica | 799 | 86.61% | 13.39% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419159230 | C->T | LOC_Os04g32260(LOC_Os04g32260.1) | INTRON |