Detailed information of SNP:
|
SNP ID:
sf0419269368(Gbrowse)
Chromosome: chr04 Position: 19269368 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.65% | 45.35% |
| All Indica | 798 | 91.48% | 8.52% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419269368 | C->T | LOC_Os04g32420(LOC_Os04g32420.1) | Non-Synonymous SNP |