Detailed information of SNP:
|
SNP ID:
sf0419286342(Gbrowse)
Chromosome: chr04 Position: 19286342 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 91.58% | 8.42% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 482 | 76.97% | 23.03% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 326 | 86.81% | 13.19% |
| Tropical Japonica | 90 | 66.67% | 33.33% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419286342 | C->A | INTERGENIC | None |