Detailed information of SNP:
|
SNP ID:
sf0419335191(Gbrowse)
Chromosome: chr04 Position: 19335191 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 52.01% | 47.99% |
| All Indica | 796 | 85.68% | 14.32% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 208 | 77.88% | 22.12% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419335191 | G->A | INTERGENIC | None |