Detailed information of SNP:
|
SNP ID:
sf0419357386(Gbrowse)
Chromosome: chr04 Position: 19357386 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 97.57% | 2.43% |
| All Indica | 785 | 99.75% | 0.25% |
| All Japonica | 418 | 93.30% | 6.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 100.00% | 0.00% |
| Indica II | 209 | 99.52% | 0.48% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 288 | 93.75% | 6.25% |
| Tropical Japonica | 78 | 98.72% | 1.28% |
| Japonica Intermediate | 52 | 82.69% | 17.31% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419357386 | G->A | INTERGENIC | None |