Detailed information of SNP:
|
SNP ID:
sf0419359912(Gbrowse)
Chromosome: chr04 Position: 19359912 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1174 | 89.86% | 10.14% |
| All Indica | 765 | 98.56% | 1.44% |
| All Japonica | 299 | 65.89% | 34.11% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 357 | 99.16% | 0.84% |
| Indica II | 207 | 98.55% | 1.45% |
| Indica Intermediate | 201 | 97.51% | 2.49% |
| Temperate Japonica | 200 | 52.00% | 48.00% |
| Tropical Japonica | 63 | 98.41% | 1.59% |
| Japonica Intermediate | 36 | 86.11% | 13.89% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 87.88% | 12.12% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419359912 | A->G | INTERGENIC | None |