Detailed information of SNP:
|
SNP ID:
sf0419364836(Gbrowse)
Chromosome: chr04 Position: 19364836 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1328 | 91.19% | 8.81% |
| All Indica | 784 | 98.98% | 1.02% |
| All Japonica | 424 | 75.47% | 24.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 99.46% | 0.54% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 205 | 97.56% | 2.44% |
| Temperate Japonica | 280 | 66.43% | 33.57% |
| Tropical Japonica | 85 | 97.65% | 2.35% |
| Japonica Intermediate | 59 | 86.44% | 13.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419364836 | G->A | INTERGENIC | None |