Detailed information of SNP:
|
SNP ID:
sf0419396669(Gbrowse)
Chromosome: chr04 Position: 19396669 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.70% | 43.30% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419396669 | T->C | INTERGENIC | None |