Detailed information of SNP:
|
SNP ID:
sf0419490881(Gbrowse)
Chromosome: chr04 Position: 19490881 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.15% | 44.85% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419490881 | A->T | INTERGENIC | None |