Detailed information of SNP:
|
SNP ID:
sf0419565909(Gbrowse)
Chromosome: chr04 Position: 19565909 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 63.51% | 36.49% |
| All Indica | 793 | 95.08% | 4.92% |
| All Japonica | 491 | 15.48% | 84.52% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 14.11% | 85.89% |
| Tropical Japonica | 91 | 29.67% | 70.33% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419565909 | C->T | LOC_Os04g32740(LOC_Os04g32740.1) | INTRON |