Detailed information of SNP:
|
SNP ID:
sf0419566374(Gbrowse)
Chromosome: chr04 Position: 19566374 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.90% | 42.10% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419566374 | A->G | LOC_Os04g32740(LOC_Os04g32740.1) | INTRON |