Detailed information of SNP:
|
SNP ID:
sf0419581328(Gbrowse)
Chromosome: chr04 Position: 19581328 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.36% | 44.64% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419581328 | T->C | LOC_Os04g32750(LOC_Os04g32750.1) | INTRON |