Detailed information of SNP:
|
SNP ID:
sf0419584958(Gbrowse)
Chromosome: chr04 Position: 19584958 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.75% | 44.25% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419584958 | C->T | INTERGENIC | None |