Detailed information of SNP:
|
SNP ID:
sf0419591962(Gbrowse)
Chromosome: chr04 Position: 19591962 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1336 | 98.35% | 1.65% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 422 | 96.21% | 3.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 284 | 97.89% | 2.11% |
| Tropical Japonica | 76 | 89.47% | 10.53% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419591962 | G->A | INTERGENIC | None |