Detailed information of SNP:
|
SNP ID:
sf0419592008(Gbrowse)
Chromosome: chr04 Position: 19592008 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 96.42% | 3.58% |
| All Indica | 773 | 94.31% | 5.69% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 44 | 90.91% | 9.09% |
| Indica I | 368 | 94.84% | 5.16% |
| Indica II | 196 | 93.88% | 6.12% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419592008 | C->T | INTERGENIC | None |