Detailed information of SNP:
|
SNP ID:
sf0419601423(Gbrowse)
Chromosome: chr04 Position: 19601423 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.19% | 42.81% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419601423 | T->G | LOC_Os04g32780(LOC_Os04g32780.1) | Synonymous |