Detailed information of SNP:
|
SNP ID:
sf0419612119(Gbrowse)
Chromosome: chr04 Position: 19612119 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.51% | 39.49% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 12.27% | 87.73% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 14.33% | 85.67% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419612119 | C->T | INTERGENIC | None |