Detailed information of SNP:
|
SNP ID:
sf0419615642(Gbrowse)
Chromosome: chr04 Position: 19615642 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 95.18% | 4.82% |
| All Indica | 793 | 98.74% | 1.26% |
| All Japonica | 475 | 88.42% | 11.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 97.56% | 2.44% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 320 | 86.88% | 13.12% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 63 | 82.54% | 17.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419615642 | T->C | INTERGENIC | None |