Detailed information of SNP:
|
SNP ID:
sf0419656256(Gbrowse)
Chromosome: chr04 Position: 19656256 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 63.19% | 36.81% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 19.10% | 80.90% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419656256 | G->A | INTERGENIC | None |