Detailed information of SNP:
|
SNP ID:
sf0419656828(Gbrowse)
Chromosome: chr04 Position: 19656828 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 63.00% | 37.00% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 19.10% | 80.90% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419656828 | T->G | INTERGENIC | None |