Detailed information of SNP:
|
SNP ID:
sf0419669276(Gbrowse)
Chromosome: chr04 Position: 19669276 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.89% | 41.11% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 334 | 6.59% | 93.41% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419669276 | T->C | INTERGENIC | None |