Detailed information of SNP:
|
SNP ID:
sf0419673356(Gbrowse)
Chromosome: chr04 Position: 19673356 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.61% | 44.39% |
| All Indica | 798 | 91.85% | 8.15% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419673356 | T->C | INTERGENIC | None |