Detailed information of SNP:
|
SNP ID:
sf0419673962(Gbrowse)
Chromosome: chr04 Position: 19673962 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 54.26% | 45.74% |
| All Indica | 791 | 89.89% | 10.11% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 371 | 90.03% | 9.97% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419673962 | G->A | INTERGENIC | None |