Detailed information of SNP:
|
SNP ID:
sf0419673979(Gbrowse)
Chromosome: chr04 Position: 19673979 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 71.30% | 28.70% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 496 | 35.48% | 64.52% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 49.55% | 50.45% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419673979 | G->T | INTERGENIC | None |