Detailed information of SNP:
|
SNP ID:
sf0419675276(Gbrowse)
Chromosome: chr04 Position: 19675276 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 55.37% | 44.63% |
| All Indica | 796 | 88.07% | 11.93% |
| All Japonica | 495 | 0.61% | 99.39% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 87.90% | 12.10% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 333 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419675276 | T->C | INTERGENIC | None |