Detailed information of SNP:
|
SNP ID:
sf0419676666(Gbrowse)
Chromosome: chr04 Position: 19676666 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.55% | 45.45% |
| All Indica | 798 | 86.97% | 13.03% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419676666 | T->A | INTERGENIC | None |