Detailed information of SNP:
|
SNP ID:
sf0419713065(Gbrowse)
Chromosome: chr04 Position: 19713065 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 88.50% | 11.50% |
| All Indica | 750 | 86.13% | 13.87% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 26.56% | 73.44% |
| Indica I | 353 | 88.95% | 11.05% |
| Indica II | 195 | 82.05% | 17.95% |
| Indica Intermediate | 202 | 85.15% | 14.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419713065 | A->T | INTERGENIC | None |