Detailed information of SNP:
|
SNP ID:
sf0419717168(Gbrowse)
Chromosome: chr04 Position: 19717168 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 71.14% | 28.86% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 496 | 35.08% | 64.92% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 49.40% | 50.60% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419717168 | G->C | LOC_Os04g32920(LOC_Os04g32920.5) | INTRON |
| sf0419717168 | G->C | LOC_Os04g32920(LOC_Os04g32920.3) | INTRON |
| sf0419717168 | G->C | LOC_Os04g32920(LOC_Os04g32920.4) | INTRON |
| sf0419717168 | G->C | LOC_Os04g32920(LOC_Os04g32920.1) | INTRON |
| sf0419717168 | G->C | LOC_Os04g32920(LOC_Os04g32920.2) | INTRON |