Detailed information of SNP:
|
SNP ID:
sf0419733375(Gbrowse)
Chromosome: chr04 Position: 19733375 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 69.42% | 30.58% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 27.16% | 72.84% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419733375 | A->G | INTERGENIC | None |