Detailed information of SNP:
|
SNP ID:
sf0419734528(Gbrowse)
Chromosome: chr04 Position: 19734528 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 63.55% | 36.45% |
| All Indica | 796 | 88.32% | 11.68% |
| All Japonica | 497 | 25.75% | 74.25% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 26.57% | 73.43% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419734528 | A->G | INTERGENIC | None |