Detailed information of SNP:
|
SNP ID:
sf0419740099(Gbrowse)
Chromosome: chr04 Position: 19740099 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.24% | 18.76% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 497 | 58.95% | 41.05% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 71.64% | 28.36% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419740099 | G->A | INTERGENIC | None |