Detailed information of SNP:
|
SNP ID:
sf0419740406(Gbrowse)
Chromosome: chr04 Position: 19740406 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.42% | 25.58% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 40.85% | 59.15% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 28.06% | 71.94% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419740406 | T->C | INTERGENIC | None |