Detailed information of SNP:
|
SNP ID:
sf0419778154(Gbrowse)
Chromosome: chr04 Position: 19778154 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 93.59% | 6.41% |
| All Indica | 795 | 99.12% | 0.88% |
| All Japonica | 488 | 83.40% | 16.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 331 | 84.29% | 15.71% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 64 | 59.38% | 40.62% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419778154 | C->T | INTERGENIC | None |