Detailed information of SNP:
|
SNP ID:
sf0419789387(Gbrowse)
Chromosome: chr04 Position: 19789387 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 74.05% | 25.95% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 43.06% | 56.94% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 32.54% | 67.46% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419789387 | A->G | INTERGENIC | None |