Detailed information of SNP:
|
SNP ID:
sf0419818787(Gbrowse)
Chromosome: chr04 Position: 19818787 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 60.51% | 39.49% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 21.73% | 78.27% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 18.51% | 81.49% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419818787 | G->A | INTERGENIC | None |