Detailed information of SNP:
|
SNP ID:
sf0419892415(Gbrowse)
Chromosome: chr04 Position: 19892415 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 94.62% | 5.38% |
| All Indica | 788 | 98.60% | 1.40% |
| All Japonica | 438 | 92.69% | 7.31% |
| Aus | 62 | 74.19% | 25.81% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 206 | 97.09% | 2.91% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 317 | 99.05% | 0.95% |
| Tropical Japonica | 63 | 58.73% | 41.27% |
| Japonica Intermediate | 58 | 94.83% | 5.17% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419892415 | C->T | INTERGENIC | None |