Detailed information of SNP:
|
SNP ID:
sf0419931753(Gbrowse)
Chromosome: chr04 Position: 19931753 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1333 | 64.82% | 35.18% |
| All Indica | 714 | 93.28% | 6.72% |
| All Japonica | 496 | 26.01% | 73.99% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 325 | 93.54% | 6.46% |
| Indica II | 205 | 90.24% | 9.76% |
| Indica Intermediate | 184 | 96.20% | 3.80% |
| Temperate Japonica | 334 | 27.84% | 72.16% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419931753 | G->A | INTERGENIC | None |