Detailed information of SNP:
|
SNP ID:
sf0419944922(Gbrowse)
Chromosome: chr04 Position: 19944922 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1264 | 95.65% | 4.35% |
| All Indica | 791 | 99.87% | 0.13% |
| All Japonica | 361 | 85.60% | 14.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 208 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 242 | 79.34% | 20.66% |
| Tropical Japonica | 66 | 100.00% | 0.00% |
| Japonica Intermediate | 53 | 96.23% | 3.77% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419944922 | G->A | INTERGENIC | None |