Detailed information of SNP:
|
SNP ID:
sf0419993746(Gbrowse)
Chromosome: chr04 Position: 19993746 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 97.32% | 2.68% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419993746 | C->T | INTERGENIC | None |