Detailed information of SNP:
|
SNP ID:
sf0419999358(Gbrowse)
Chromosome: chr04 Position: 19999358 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 92.44% | 7.56% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 493 | 79.11% | 20.89% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 79.88% | 20.12% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419999358 | G->A | INTERGENIC | None |