Detailed information of SNP:
|
SNP ID:
sf0420007659(Gbrowse)
Chromosome: chr04 Position: 20007659 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 92.52% | 7.48% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 495 | 78.99% | 21.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 79.94% | 20.06% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420007659 | C->T | INTERGENIC | None |