Detailed information of SNP:
|
SNP ID:
sf0420018663(Gbrowse)
Chromosome: chr04 Position: 20018663 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1134 | 82.36% | 17.64% |
| All Indica | 537 | 70.95% | 29.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 53 | 32.08% | 67.92% |
| Indica I | 243 | 70.37% | 29.63% |
| Indica II | 145 | 78.62% | 21.38% |
| Indica Intermediate | 149 | 64.43% | 35.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 78.79% | 21.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420018663 | A->G | LOC_Os04g33340(LOC_Os04g33340.1) | Non-Synonymous SNP |