Detailed information of SNP:
|
SNP ID:
sf0420018678(Gbrowse)
Chromosome: chr04 Position: 20018678 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 92.78% | 7.22% |
| All Indica | 782 | 91.94% | 8.06% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 364 | 92.03% | 7.97% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 206 | 90.29% | 9.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420018678 | G->A | LOC_Os04g33340(LOC_Os04g33340.1) | Non-Synonymous SNP |