Detailed information of SNP:
|
SNP ID:
sf0420020165(Gbrowse)
Chromosome: chr04 Position: 20020165 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.59% | 40.41% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420020165 | A->G | INTERGENIC | None |