Detailed information of SNP:



SNP ID: sf0420022466(Gbrowse)

Chromosome: chr04

Position: 20022466
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 92.52% 7.48%
All Indica799 99.87% 0.13%
All Japonica496 79.23% 20.77%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica334 80.54% 19.46%
Tropical Japonica94 90.43% 9.57%
Japonica Intermediate68 57.35% 42.65%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0420022466 C->T INTERGENIC None