Detailed information of SNP:
|
SNP ID:
sf0420026499(Gbrowse)
Chromosome: chr04 Position: 20026499 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.00% | 33.00% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 20.93% | 79.07% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 19.70% | 80.30% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420026499 | T->C | INTERGENIC | None |