Detailed information of SNP:
|
SNP ID:
sf0420038000(Gbrowse)
Chromosome: chr04 Position: 20038000 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.51% | 30.49% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 496 | 28.63% | 71.37% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 28.74% | 71.26% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420038000 | T->C | INTERGENIC | None |