Detailed information of SNP:
|
SNP ID:
sf0420062542(Gbrowse)
Chromosome: chr04 Position: 20062542 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.80% | 38.20% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420062542 | T->G | LOC_Os04g33410(LOC_Os04g33410.1) | Non-Synonymous SNP |